======CIS Spring 2018 Projects====== =====Project Ideas===== Here is a [[:courses:456:2018:456-2018-possible-projects | list of the projects and each individual set of slides]]. These will be presented in class over the first few sessions of class. Remember several points, however: * This list is not necessarily complete. More will be added. * You are ultimately responsible for finding and proposing a project. * You must get agreement from your mentors that your proposed project is one for which you are appropriate. * Your project does not have to be one of the ones in this suggested list. However, if it is not one of these, you should also get my agreement that it is appropriate for the course. =====Instructions to 456 Students===== The links below point to the Wiki pages for your projects. You should follow the link. This will bring you to a project home page that you can edit once you log in. The two little gear symbols on the upper right give access to functions like login, logout, edit page, etc. The login/logout is on the leftmost gear. Note that there are many styles of Wiki, with different syntax. This one is "dokuwiki". There is a link to help pages from the edit page. The current default access settings are "read" for the CiiS lab, no access to members of the general public, and full power to members of your group. If you want to restrict read access to smaller group (e.g., all 456 students, etc.) contact Prof. Taylor. Prof. Taylor can also implement access control for individual pages if you so desire. If you want the whole world to be able to read your project pages, that can be arranged. Do **not** post anything to unprotected pages that you want kept private until you have arranged with Prof. Taylor to protect them. Also, verify that each member of your group can log in. If you have trouble, contact Prof. Taylor via email providing correct name and JHED id. Finally, if you want to give other individuals (e.g., your mentors) access to your project pages, provide name and JHED id to Prof. Taylor **NOTE:** At the end of the semester, all projects will be made readable to the general public, unless you make arrangements otherwise with Prof. Taylor =====Certificates and Awards============ **Final Day Photos ** \\ **Certificates and Awards** \\ **Here is the Link:** [[:courses:456:2018:456-2018-24:Project-24 | Certificates and Awards]] =====Nondisclosure agreement for in-class discussion===== As we discussed in class, some of the projects may contain potentially patentable material or other material that should not be disclosed publicly until a later time. In order to permit free in-class discussion of this material, we have developed a non-disclosure agreement. When asked, the entire class agreed to sign such an agreement, a copy of which is linked below. * {{:courses:456:2018:2018_nda_for_in-class_discussions.pdf|Here is a link to current year's agreement}}. * If **any** member of the class has any reservations about this, please inform us immediately. * Also, class members are reminded to identify potentially confidential material on any slides or other presentation material used in class =====01: Smart Endoscope===== **Team Members:** Rui Yin\\ **Mentors:** Russell Taylor, Masaru Ishii\\ **Project Pages:** [[:courses:456:2018:456-2018-01:Project-01 | Smart Endoscope]] =====02: Query by Video for Surgical Activity===== **Team Members:** Felix Yu, GianLuca Croso\\ **Mentors:** Tae-Soo Kim, Austin Reiter\\ **Project Pages:** [[:courses:456:2018:456-2018-02:Project-02| Query by Video]] =====03: Photoacoustic System for Spinal Surgery===== **Team Members:** Blackberrie Eddins\\ **Mentor:** Muyinatu Bell\\ **Project Pages:** [[:courses:456:2018:456-2018-03:Project-03 | Photoacoustic System for Spinal Surgery]] =====04: Anomaly detection for treatment planning and a learning health system in radiotherapy===== **Team Members:** Daniel Yuan, Vincent Qi\\ **Mentors:** Todd McNutt, Pranav Lakshminarayanan\\ **Project Pages:** [[:courses:456:2018:456-2018-04:Project-04 | Anomaly detection for treatment planning and a learning health system in radiotherapy]] =====05: User interface to extract radio-morphologic features for refined dose-toxicity analysis in radiotherapy===== **Team Members:** Willie Franceschi, Alaleh Azhir, Santiago Appiani\\ **Mentors:** Todd McNutt, Pranav Lakshminarayanan\\ **Project Pages:** [[:courses:456:2018:456-2018-05:Project-05 | User interface to extract radio-morphologic features for refined dose-toxicity analysis in radiotherapy]] =====06: Objective Assessment of Robotic Surgery Skill===== **Team Members:** Scott Pourshalchi, Giacomo Taylor\\ **Mentors:** Jeremy Brown, Anand Malpani\\ **Project Pages:** [[:courses:456:2018:456-2018-06:Project-06 | Objective Assessment of Robotic Surgery Skill]] =====07: Robot Control Algorithms Based on Sclera Force Information===== **Team Members:** Ali Ebrahimi\\ **Mentors:** Marin Kobilarov, Iulian Iordachita, Russell Taylor, Nirav Patel\\ **Project Pages:** [[:courses:456:2018:456-2018-07:Project-07 | Robot Control Algorithms Based on Sclera Force Information]] =====08: Low Dose Fluoroscopy for Orthopedic Surgery===== **Team Members:** Michael Mudgett, Mariya Kazachkova\\ **Mentors:** Mathias Unberath\\ **Project Pages:** [[:courses:456:2018:456-2018-08:Project-08 | Low Dose Fluoroscopy for Orthopedic Surgery]] =====09: Smart Evaluation and Remote Feedback for HMD Based Medical Training ===== **Team Members:** Benjamin Pikus, Patrick Myers, Alexander Chang\\ **Mentors:** Ehsan Azimi, Chien-Ming Huang, Peter Kazanzides, Camilo Molina\\ **Project Pages:** [[:courses:456:2018:456-2018-09:Project-09 | Content Generation for HMD Based Medical Training]] =====10: Semi-Automatic Content Generation and HMD-Based Eye-Gaze Analysis in Performing Medical Procedures ===== **Team Members:** Prateek Bhatnagar, Allan Wang\\ **Mentors:** Ehsan Azimi, Chien-Ming Huang, Peter Kazanzides, Nassir Navab, Russ Taylor\\ **Project Pages:** [[:courses:456:2018:456-2018-10:Project-10 | HMD-Based Eye-Gaze Analysis in Performing Medical Procedure]] =====11: Tool Tacking for Periacetabular Osteotomy using CamC===== **Team Members:** Wenhao GU, Nianhang DU, Billy Carrington\\ **Mentors:** Mathias Unberath, Robert Grupp, Mehran Armand, John Tis\\ **Project Pages:** [[:courses:456:2018:456-2018-11:Project-11 | Tool Tacking for Periacetabular Osteotomy using CamC]] =====12: Patient Flow and Staff Scheduling in Perioperative Care===== **Team Members:** Sara Cronin, Evelyn Yeh\\ **Mentors:** Sauleh Siddiqu\\ **Project Pages:** [[:courses:456:2018:456-2018-12:Project-12 | Patient Flow and Staff Scheduling in Perioperative Care]] =====13: Septum Reconstruction from Tool Motion Data===== **Team Members:** Rohit Joshi, Manyu Sharma\\ **Mentors:** Anand Malpani, Ayushi Sinha, Molly O’Brien\\ **Project Pages:** [[:courses:456:2018:456-2018-13:Project-13 | Septum Reconstruction from Tool Motion Data]] =====14: Deep Learning for fluoroscopic Feature Detection===== **Team Members:** Liujiang Yan\\ **Mentors:** Rob Grupp\\ **Project Pages:** [[:courses:456:2018:456-2018-14:Project-14 | Deep Learning for fluoroscopic Feature Detection]] =====15: Force Sensing Drill/Cutter Tool for Skull Base Surgery ===== **Team Members:** Prasad Vagdargi, Brandon Tran, Nick Skacel\\ **Mentors:** Russell Taylor, Paul Wilkening, Yunus Sevimli, David Levi, Francis Creigton, Chris Razavi\\ **Project Pages:** [[:courses:456:2018:456-2018-15:Project-15 | Force Sensing Drill/Cutter Tool for Skull Base Surgery]] =====16: Design and Fabrication of tactile interface for palpation===== **Team Members:** Amrita Krishnaraj\\ **Mentors:** Nitish Thakor, Jeremy Brown\\ **Project Pages:** [[:courses:456:2018:456-2018-16:Project-16 | Design and Fabrication of tactile interface for palpation]] =====17: Machine learning to determine regions of influence of treatment related toxicity in lung cancer===== **Team Members:** Sunny Thodupunuri, Archan Patel\\ **Mentors:** Todd McNutt, Pranav Lakshminarayanan\\ **Project Pages:** [[:courses:456:2018:456-2018-17:Project-17 | Machine learning to determine regions of influence of treatment related toxicity in lung cancer]] =====18: Ultrasound Needle Guidance for Hydrogel Injection During Cervical Cancer Brachytherapy ===== **Team Members:** Tracy Kao\\ **Mentors:** Emad Boctor, Akila Viswanathan, Carmen Kut\\ **Project Pages:** [[:courses:456:2018:456-2018-18:Project-18 | Ultrasound Needle Guidance for Hydrogel Injection During Cervical Cancer Brachytherapy]] =====19: Robot-Assisted Transcranial Magnetic Stimulation (RA-TMS)===== **Team Members:** Ganesh Arvapalli\\ **Mentors:** Amir Kherdamand, David S. Zee, Farshid Alambeigi, Mehran Armand\\ **Project Pages:** [[:courses:456:2018:456-2018-19:Project-19 | Robot-Assisted Transcranial Magnetic Stimulation (RA-TMS)]] =====20: Enhancement of needle tracking accuracy using US/CT registration applied to spinal surgery===== **Team Members:** Eduardo Gonzalez\\ **Mentors:** Muyinatu Bell\\ **Project Pages:** [[:courses:456:2018:456-2018-20:Project-20 | Enhancement of needle tracking accuracy using US/CT registration applied to spinal surgery]] =====21: Auto-Segmentation of Spine CT for Data Analysis of Surgical Outcome===== **Team Members:** Ben Ramsay, Nicolas Eng\\ **Mentors:** Jeff Siewerdsen, Tharindu De Silva\\ **Project Pages:** [[:courses:456:2018:456-2018-21:Project-21 | Auto-Segmentation of Spine CT for Data Analysis of Surgical Outcome]] =====22: Structure from Motion from Long Video Sequence===== **Team Members:** Zach Heiman\\ **Mentors:** Xingtong Liu\\ **Project Pages:** [[:courses:456:2018:456-2018-22:Project-22 | Structure from Motion from Long Video Sequence]] =====23: Project 23===== **Team Members:** Member1, Member2\\ **Mentors:** Mentor1, Mentor2\\ **Project Pages:** [[:courses:456:2018:456-2018-23:Project-23 | Project-23]]