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--- courses:455-655:2024:fall-2024-schedule [2024/08/26 13:32] – [Week 12] rtaylor2
+++ courses:455-655:2024:fall-2024-schedule [2024/12/13 18:16] (current) – [Optional Programming Assignment #5] tkashta1
@@ Line 29: / Line 29: @@
   * September 3
     * Guest Lecture from Prof. Axel Krieger
+      * {{ :courses:455-655:lectures:cis_guest_lecture_ak_v4.pdf |The Future of Surgical Robotics: Vision, Challenges, and the Science to Meet Them}}
   * September 5
     * Begin {{ :courses:455-655:lectures:frames.pdf|Basic Mathematical Methods for CIS}}
@@ Line 38: / Line 39: @@
   * September 10
     * Conclude {{ :courses:455-655:lectures:frames.pdf|Basic Mathematical Methods for CIS}}
-    * **Hand out Homework Assignment #1**
+    * **Hand out{{ :courses:455-655:2024:homework_1_600-455-2024.pdf | Homework Assignment #1}}**
   * September 12
     * {{ :courses:455-655:lectures:rigid3d3dcalculations.pdf |Computing rigid 3D-3D transformations from point and line pairs}}
@@ Line 53: / Line 54: @@
           * Also, you can do web searches on "surgical navigation technology"
   * September 19
-    * **Hand out Homework #2**
     * Begin {{ :courses:455-655:lectures:calibration.pdf |Calibration}}
       * {{ :courses:455-655:lectures:leastsquaresreview.pdf |Least Squares Review}} (if time)
@@ Line 62: / Line 62: @@
 =====Week 5=====
   * September 24
-    * Guest Lecture TBD
+    * Guest Lecture: Computer-Integrated Surgery: Applications in Neurosurgery (Dr. Tito Porras)
+      * {{ :courses:455-655:2024:20240924_cis_technologyneurosurgery.pdf |Computer-Integrated Surgery: Applications in Neurosurgery}}
     * **Homework #1 Due**
   * September 26
@@ Line 69: / Line 70: @@
       * {{ :courses:455-655:lectures:interpolationreview.pdf |Interpolation Review}}
       * [[https://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.8.6623&rep=rep1&type=pdf|Paper on scattered point set interpolation]]
-    * **Hand out Programming Assignments #1 and #2**
+    * **Hand out {{ :courses:455-655:2024:programmingassignments1and2.pdf |Programming Assignments #1 and #2}}**
-        * {{ :courses:455-655:2023:programmingassignments1and2_scenario.pdf |Scenario Slides}}
+        * {{ :courses:455-655:2024:programmingassignments1and2_scenario.pdf |Scenario Slides}}
-        * {{ :courses:455-655:2023:pa1_student_data.zip |Data for Programming Assignment #1}}
+        * {{ :courses:455-655:2024:pa_general_expectations.pdf | PA general expectations}}
-        * {{ :courses:455-655:2023:pa2_student_data.zip |Data for Programming Assignment #2}}
+        * {{ :courses:455-655:2024:pa_1_student_data.zip |Data for Programming Assignment #1}}
+        * {{ :courses:455-655:2024:pa_2_student_data.zip |Data for Programming Assignment #2}}
 =====Week 6=====
@@ Line 81: / Line 83: @@
     * Finish {{ :courses:455-655:lectures:segmentation_-_2023.pdf |Segmentation and Modeling}}
       * [[https://www.cs.jhu.edu/cista/455Lectures/Segmentation-2%20%28Rev%20D%29.pdf|2018 Guest lecture by Prof. Jerry Prince #2]]
       * {{ :courses:455-655:lectures:gueziecsimp.pdf |Surface simplification inside a tolerance volume (Andre Gueziec's method)}}
+    * **Hand out {{ :courses:455-655:2024:homework_2_600-455-2024.pdf |Homework #2}}**
 =====Week 7=====
   * October 8
-    * * {{ :courses:455-655:lectures:registration_part_1.pdf |Registration (Part 1)}}
+    * {{ :courses:455-655:lectures:registration_part_1.pdf |Registration (Part 1)}}
       * {{ :courses:455-655:lectures:finding_point-pairs.pdf |Finding point pairs for Iterated Closest Point algorithms}}
         * Reference Material
@@ Line 93: / Line 96: @@
   * October 10
     * **Programming Assignment #1 due**
-    * {{ :courses:455-655:lectures:2023-10-12_cis_i_cochlear_implant_talk_.pdf |**Guest Lecture: Dr. Deepa Galaiya**}} (Prof. Taylor at MICCAI Conference)
+      * Guest lecture TBD or continue with Registration
 =====Week 8=====
   * October 15
-    * **Fall break (no class)**
+    * Finish {{ :courses:455-655:lectures:registration_part_2.pdf |Registration (Part 2)}}
-  * October 17
-    * **Hand out Programming Assignments #3 and #4**
-    * Begin {{ :courses:455-655:lectures:registration_part_2.pdf |Registration (Part 2)}}
       * {{ :courses:455-655:lectures:coherent_point_drift_registration.pdf |Coherent Point Drift Slides}}
       * Reference and supplemental Material
@@ Line 105: / Line 105: @@
         * [[https://en.wikipedia.org/wiki/Point_set_registration|Wikipedia article on point set registration]]
         * {{ :courses:455-655:lectures:defense_presentation_cong_gao_-_handouts.pdf |Fluoroscopic Navigation for Robot-Assisted Orthopedic Surgery (Cong Gao)}}
+  * October 17
+    * **WSE Fall Break - No class**
 =====Week 9=====
   * October 22
-    * Finish {{ :courses:455-655:lectures:registration_part_2.pdf |Registration (Part 2)}}
-      * {{ :courses:455-655:lectures:coherent_point_drift_registration.pdf |Coherent Point Drift Slides}}
-  * October 24
-     * **Homework 2 Due**
-     * **Hand out Homework Assignment #3**
     * {{ :courses:455-655:lectures:registration_part_3.pdf |Registration (Part 3)}}
       * Supplemental material
@@ Line 117: / Line 114: @@
         * [[https://www.cs.jhu.edu/cista/455/Lectures/AtlasValidation%20-%20Chintalapani%202010.pptx.pdf|Statistical Atlas Validation (G. Chintalapani)]]
         * [[https://www.cs.jhu.edu/cista/455/Lectures/Miccai_2011_TALK_Sharmi.pdf|Improving mesh vertices (S. Seshamani)]]
+  * October 24
+    * **Hand out {{ :courses:455-655:2024:programming_3_and_4_600-445-2024.pdf |Programming Assignments #3 and #4}}**
+      * {{ :courses:455-655:2024:2024_pa345_student_data.zip |Programming Assignments 3, 4, and 5 Data}}
+    * Finish {{ :courses:455-655:lectures:registration_part_3.pdf |Registration (Part 3)}}
+      * Supplemental material
+        * [[https://www.cs.jhu.edu/cista/455/Lectures/Gouthami_StatisticalAtlas_CIS446-converted.pptx.pdf|Statistical Atlases Construction and Application (G. Chintalapani)]]
+        * [[https://www.cs.jhu.edu/cista/455/Lectures/AtlasValidation%20-%20Chintalapani%202010.pptx.pdf|Statistical Atlas Validation (G. Chintalapani)]]
+        * [[https://www.cs.jhu.edu/cista/455/Lectures/Miccai_2011_TALK_Sharmi.pdf|Improving mesh vertices (S. Seshamani)]]
+    * Begin  * {{ :courses:455-655:lectures:medical_robots_part_1.pdf |Medical Robotics, Constrained Control and Virtual Fixtures (Part 1)}} (if time)
 =====Week 10=====
   * October 29
-     *  **Programming Assignment #2 due**
+    * **Homework 2 Due**
-    * {{ :courses:455-655:lectures:medical_robots_part_1.pdf |Medical Robotics, Constrained Control and Virtual Fixtures (Part 1)}}
+    * Guest lecture from Prof. Emad Boctor
   * October 31
-    * {{ :courses:455-655:lectures:medical_robots_part_2.pdf |Medical Robotics, Constrained Control and Virtual Fixtures (Part 2)}}
+    * Finish{{ :courses:455-655:lectures:medical_robots_part_1.pdf |Medical Robotics, Constrained Control and Virtual Fixtures (Part 1)}}
+    * Begin {{ :courses:455-655:lectures:medical_robots_part_2.pdf |Medical Robotics, Constrained Control and Virtual Fixtures (Part 2)}}
       * Supplemental Material: {{ :courses:455-655:lectures:max_li_iros_2020_presentation.pdf |Anatomical Mesh-Based Virtual Fixtures for Surgical Robots}}
 =====Week 11=====
   * November 5
-    * {{ :courses:455-655:lectures:medical_robots_part_3_-_autonomy.pdf |Autonomy and Semi-Autonomous Behavior in Surgical Robot Systems}}
+    * **Programming Assignment #2 due**
+    * Hand out **{{ :courses:455-655:2024:homework_3_600-455-2024.pdf |Homework Assignment #3}}**
+    * Finish {{ :courses:455-655:lectures:medical_robots_part_2.pdf |Medical Robotics, Constrained Control and Virtual Fixtures (Part 2)}}
+      * Supplemental Material: {{ :courses:455-655:lectures:max_li_iros_2020_presentation.pdf |Anatomical Mesh-Based Virtual Fixtures for Surgical Robots}}
+    * Begin {{ :courses:455-655:lectures:medical_robots_part_3_-_autonomy.pdf |Human-Machine Partnerships in Surgical Robot Systems}}
       * [[ https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=9805578 | R. H. Taylor, N. Simaan, A. Menciassi, and G. Z. Yang, "Surgical Robotics and Computer-Integrated Interventional Medicine", Proceedings of the IEEE, vol. 110- 7, pp. 823-834, 2022.]]
       * [[ https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=9805576| P. Fiorini, K. Y. Goldberg, Y. Liu, and R. H. Taylor, "Concepts and Trends in Autonomy for Robot-Assisted Surgery", Proceedings of the IEEE, vol. 110- 7, pp. 993-1011, 2022.]]
@@ Line 134: / Line 145: @@
   * November 7
-    * **Homework Assignment 3 Due**
+     * Finish {{ :courses:455-655:lectures:medical_robots_part_3_-_autonomy.pdf |Human-Machine Partnerships in Surgical Robot Systems}}
-    * Lecture TBD
+      * [[ https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=9805578 | R. H. Taylor, N. Simaan, A. Menciassi, and G. Z. Yang, "Surgical Robotics and Computer-Integrated Interventional Medicine", Proceedings of the IEEE, vol. 110- 7, pp. 823-834, 2022.]]
+      * [[ https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=9805576| P. Fiorini, K. Y. Goldberg, Y. Liu, and R. H. Taylor, "Concepts and Trends in Autonomy for Robot-Assisted Surgery", Proceedings of the IEEE, vol. 110- 7, pp. 993-1011, 2022.]]
+      * [[ https://doi.org/10.1117/12.2550198 10.1117/12.2550198 | T. Xie, M. Shahbazi, Y. Wu, R. H. Taylor, and E. M. Boctor, "Stabilized ultrasound imaging of a moving object using 2D B-mode images and convolutional neural network", in Proc.SPIE, 2020.]]
+      * {{ :courses:455-655:lectures:tx-stable-us-spie.pdf |Slides from SPIE talk on stabilized ultrasound imaging}}
 =====Week 12=====
   * November 12
-    * Case study: {{ :courses:455-655:lectures:craniofacial_surgery.pdf |Craniofacial osteotomies}}
+    * Guest Lecture from Manish Sahu on robotic assistance for ENT surgery
   * November 14
     * **Programming Assignment #3 due**
-    * **Hand Out Optional Programming Assignment 5**
+    * **Hand Out {{ :courses:455-655:2024:programming_5_600-445-2024.pdf |Optional Programming Assignment 5}}**
-      * New PA5 Data (see also Piazza announcement)}}
+      *{{ :courses:455-655:2023:pa5_notes.pdf | Notes for PA#5: Deformable Registration to a Statistical Shape Model}}
-      *{{ :courses:455-655:2023:pa5_notes.pdf | Notes for PA#5: Deformable Registration to a Statistical Shape Model}}
+    * Case study: {{ :courses:455-655:lectures:craniofacial_surgery.pdf |Craniofacial osteotomies}}
 =====Week 13=====
-  * November 19 - TBD
+  * November 19
-  * November 21 - TBD
+    * Guest Lecture from Dr. Swaroop Vedula
+      * "What Can AI Teach a Surgeon"
+  * November 21
+     * **Homework Assignment 3 Due**
+     * **{{ :courses:455-655:2024:homework_4_600-455-2024.pdf |Hand out Homework Assignment 4}}**
+    * Guest Lecture from Prof. Iulian Iordachita
+      * {{ :courses:455-655:2024:autonomous_needle_insertions_iordachita_11_21_24_compact.pdf | Autonomous needle insertions}}
 =====Week 14=====
@@ Line 158: / Line 179: @@
   * December 3
-    * Guest Lecture TBD (Prof. Taylor at Malone Center Symposium)
+    * Guest Lecture from Prof. Todd McNutt (Prof. Taylor at Malone Center Symposium)
+      * {{ :courses:455-655:2024:taylor_2024.pdf | Radiotherapy}}
   * December 5
-    * **Programming Assignment 4 Due**
-    * ** Homework Assignment 4 due**
     * {{ :courses:455-655:lectures:therac.pdf |Safety Case Study: The Therac 25 Accidents}}
       * Background Material:
         * [[https://web.stanford.edu/class/cs240/old/sp2014/readings/therac-25.pdf|Nancy Levenson and Clark Turner, "The Investigation of the Therac 25 Accidents", Computer 26(7) pp18-41]]
         * [[http://sunnyday.mit.edu/papers/therac.pdf|Therac-25 Accidents: An Updated Version of the Original Accident Investigation Paper (by Nancy Leveson)]] from Dr. Leveson's Book, [[http://sunnyday.mit.edu/book.html|Software, System Safety, and Computers]], Addison Wesley, 1995.
+  * December 7 (Saturday)
+      * **Programming Assignment 4 Due (1:30PM)**
+      * **Homework Assignment 4 Due (1:30PM)**
 =====Optional Programming Assignment #5 =====
   * There will be no written final exam for CIS I.  Instead, there is an optional programming assignment that can be used to improve a student's grade.
-  * The due date (subject to change) is **December 14 at 1:30PM**.
+  * The due date (subject to change) is **December 14 at 10:00PM**.
   * If this due date conflicts with another final exam on the same date, then contact the TA. We will give an extension until the first day on which you do **not** have an exam, but no further.  We have very limited flexibility for this, since the assignments can require considerable time to grade.

courses/455-655/2024/fall-2024-schedule.1724679136.txt.gz · Last modified: 2024/08/26 13:32 by rtaylor2