courses:456:2022:projects

Trace:
This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.
======CIS Spring 2022 Projects======
~~NOTOC~~
=====To CIS II Students: Project Ideas=====

Here is a [[:courses:456:2022:projects:ideas:456-2022-possible-projects | list of the project ideas and each individual set of slides]] for 2022.  These will be presented in class over the first few sessions of class.

Remember several points, however:
  * This list is not necessarily complete.  More will be added.
  * You are ultimately responsible for finding and proposing a project.
  * You must get agreement from your mentors that your proposed project is one for which you are appropriate.
  * Your project does not have to be one of the ones in this suggested list.  
    * However, if it is not one of these, you should also get my agreement that it is appropriate for the course.
    * Also, feel free to fill out a "potential project" template if you have a project idea but want to recruit additional students

=====To Potential CIS II Project Mentors: How to Propose a Project Idea=====
Our Advanced CIS II projects course has a large enrollment this year, and we are actively soliciting possible projects.  As you may recall, CIS II is intended for graduate students and upper-level undergrads, in which students work in teams of 1-3 on semester-long projects broadly related to computer-integrated interventions, AI in medicine, medical image analysis, or related topics. In addition to material covered in lectures/seminars by the instructor and other faculty, students are expected to read and provide critical analysis/presentations of selected papers in recitation sessions. Students taking this course are required to undertake and report on a significant term project.  Project mentors may include faculty, engineering staff, postdocs, and (with appropriate approvals) advanced graduate students.   Students taking the course sign a non-disclosure agreement at the start of the semester, in order to enable free discussion without compromising patentability.  We also keep project web pages restricted for at least a year, or until the mentor(s) agree that they can be made public. 
 
Generally, students select projects in the first 2-3 weeks of class, although some come with an idea beforehand.  In order to suggest a project, you can fill out {{ :courses:456:2022:cis_ii_project_template.pptx |this template}} 
(typically about 2-3 slides) and send it to me (rht@jhu.edu) and to the TA (yixuan_wu@jhu.edu), along with an indication if you would like to present the idea yourself or if you would like us to present it for you.   

  * {{ :courses:456:2022:cis_ii_project_template.pptx |Project idea template }}
  * [[ :courses:456:examples:example_ideas |Example project idea slides from previous years ]]


 


=====A note to Project Mentors=====

First, thank you for mentoring a CIS II project this year.  This course provides a great educational experience for the students, and also can produce useful research results.  Its success depends greatly on the project mentors, and I hope that your experience this year has been productive both for you and for the students.

As part of our grading process, we are encouraging project mentors to provide some input.  You all should have been granted access to the course web site and to the individual project(s) that you are mentoring.

We would really appreciate it if you can answer a few questions.  Either edit the
**{{ :courses:456:2022:2022_cis_ii_project_mentors_report.docx |linked form}}**  
and email it to me (rht@jhu.edu) and the TA (Yixuan Wu, yixuan_wu@jhu.edu), with a file name like “Project xxx mentors report.docx” or just sent an email with a similar subject line. 

Finally, note that the annual final exam / poster session will be on the assigned final exam day on Zoom (https://wse.zoom.us/j/635091574).  I very much hope that you can attend.  Also, the project reports are due on the day of the poster session, but the students have been told that you need an opportunity to review the reports before then.  Also, we will need your comments to us by 9 PM on the day of the poster session, since we will be using them to help us with our evaluation of the projects.


=====Instructions to 456/496/656 Students=====
The links below point to the Wiki pages for your projects.  You should follow the link.  This will bring you to a project home page that you can edit once you log in.  The two little gear symbols on the upper right give access to functions like login, logout, edit page, etc.  The login/logout is on the leftmost gear.  Note that there are many styles of Wiki, with different syntax.  This one is "dokuwiki".  There is a link to help pages from the edit page.
 
The current default access settings are "read" for the CiiS lab, no access to members of the general public, and full power to members of your group.  If you want to restrict read access to smaller group (e.g., all 456 students, etc.) contact Prof. Taylor.  Prof. Taylor can also implement access control for individual pages if you so desire.  If you want the whole world to be able to read your project pages, that can be arranged.  Do **not** post anything to unprotected pages that you want kept private until you have arranged with Prof. Taylor to protect them.  

Also, verify that each member of your group can log in.  If you have trouble, contact Prof. Taylor via email providing correct name and JHED id.

Finally, if you want to give other individuals (e.g., your mentors) access to your project pages, provide name and JHED id to Prof. Taylor

**NOTE:** At the end of the semester, all projects will be made readable to the general public, unless you make arrangements otherwise with Prof. Taylor

=====Resources=====
  * **Google Cloud Credits:** Some projects (especially those involving machine learning) many require significant computing resources.  We have obtained a small Google Cloud Platform Education Grant to help support these projects.  See the TA if you need a coupon.

=====Nondisclosure agreement for in-class discussion=====
As we discussed in class, some of the projects may contain potentially patentable material or other material that should not be disclosed publicly until a later time.  In order to permit free in-class discussion of this material, we have developed a non-disclosure agreement. When asked, the entire class agreed to sign such an agreement, a copy of which is linked below.  

  * {{:courses:2022_nda_for_in-class_discussions.pdf|Here is a link to current year's agreement}}.
  * If **any** member of the class has any reservations about this, please inform us immediately.
  * Also, class members are reminded to identify potentially confidential material on any slides or other presentation material used in class


=====Project signup sheet=====
Here is the link to the signup sheet [[https://livejohnshopkins-my.sharepoint.com/:x:/g/personal/ywu115_jh_edu/EWyuHZiRrDlPkGR7YNqyr5kBONyrurGx9wTgWRyun64hqA?e=fOjd9d]]. A couple of things to note:
  * If you are interested in any projects, the first thing to do is to contact the mentors. Once and only after you get approved by the mentors, sign yourself up in the signup sheet.
  * A project number will then be assigned to you and your project page will be created.
  * If your name has been highlighted, it means your project has been created on the wiki page and you can start to edit it.


=====01: Vision-Based Automatic Calibration of Mosquito Dissection System for the Production of Malaria Vaccine=====
**Team Members:** Miles Liu\\
**Mentors:** Balazs Vagvolgyi, Anna Goodridge\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-01:Project-01 |Vision-Based Automatic Calibration of Mosquito Dissection System for the Production of Malaria Vaccine]]

=====02: Gaze Tracking Enabled Automatic Error Detection =====
**Team Members:** Kaitlynn Pineda\\
**Mentors:** Maia Stiber, Chien-Ming Huang\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-02:Project-02 | Gaze Tracking Enabled Automatic Error Detection]]

=====03: Automated Segmentation and Registration for Eustachian Tube Disfunction=====
**Team Members:** Ameen Amanian, Yuliang Xiao, Chanha Kim\\
**Mentors:** Francis Creighton, Mathias Unberath, Russell Taylor\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-03:Project-03 | Automated Segmentation and Registration for Eustachian Tube Disfunction]]

=====04: In Situ Needle Path Adjustment and Trajectory Optimization=====
**Team Members:** Yanzhou Wang\\
**Mentors:** Iulian Iordachita, Russell Taylor\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-04:Project-04 | In Situ Needle Path Adjustment and Trajectory Optimization]]

=====05: Surgical Phase Recognition using Deep Learning=====
**Team Members:** Xucheng Ma, Xiaorui Zhang, Wenkai Luo\\
**Mentors:** Max Li, Danielle Trakimas, Francis Creighton, Mathias Unberath, Russell Taylor\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-05:Project-05 | Surgical Phase Recognition using Deep Learning]]

=====06: Vision Guided Mosquito Dissection for the Production of Malaria Vaccine=====
**Team Members:** John Han\\
**Mentors:** Balazs Vagvolgyi \\
**Project Pages:** [[:courses:456:2022:projects:456-2022-06:Project-06 | Vision Guided Mosquito Dissection for the Production of Malaria Vaccine]]

=====07: Co-robotic Ultrasound Imaging of Breast Assisting Mammography=====
**Team Members:** Julian Brown, Kevin Wang, Yuxin Chen\\
**Mentors:** Yixuan Wu, Web Stayman, Russell Taylor, Emad Boctor\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-07:Project-07 | Co-robotic Ultrasound Imaging of Breast Assisting Mammography]]

=====08: Surgical Skill Analysis with Virtual Reality=====
**Team Members:** Liza Naydanova, Aditya Khandeshi, Alexandra Szewc\\
**Mentors:** Max Li, Adnan Munawar, Francis Creighton, Mathias Unberath, Russell Taylor\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-08:Project-08 | Surgical Skill Analysis with Virtual Reality]]

=====09: Virtual Reality Guided Skull-base Surgery=====
**Team Members:** HongYi Fan, Tommy Liang, Jintan Zhang\\
**Mentors:** Max Li, Adnan Munawar, Francis Creighton, Mathias Unberath, Russell Taylor\\
**Project Pages:** [[courses:456:2022:projects:456-2022-09:project-09|Virtual Reality Guided Skull-base Surgery]]

=====10: Multisensory Navigational Aid for Visual Prosthesis Users =====
**Team Members:** An Chi Chen\\
**Mentors:** Seth Billings, Chi Ewulum\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-10:Project-10 | Multisensory Navigational Aid for Visual Prosthesis Users]]

=====11: 3D Segmentation of Hard and Soft Tissue for Simulating X-ray Image Formation with Deep Learning=====
**Team Members:** Sean Darcy, Qiyuan Wu, Zhiyuan Ding\\
**Mentors:** Benjamin Killeen, Mathias Unberath \\
**Project Pages:** [[:courses:456:2022:projects:456-2022-11:Project-11 | 3D Segmentation of Hard and Soft Tissue for Simulating X-ray Image Formation with Deep Learning]]

=====12: Patch ultrasound user interface=====
**Team Members:** Shuran Zhang, Yuanwu He\\
**Mentors:** Keshuai Xu, Emad Boctor\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-12:Project-12 | Patch ultrasound user interface]]

=====13: Development of a Wearable Intracranial Pressure Monitoring Device=====
**Team Members:** Ese Bowry, Marissa Hsu\\
**Mentors:** Joshua Liu, Chad Gordon, Mehran Armand\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-13:Project-13 | Development of a Wearable Intracranial Pressure Monitoring Device]]

=====14: Motion Compensation and Evaluation for 3D Head Reconstruction=====
**Team Members:** Unnat Antani\\
**Mentors:** Can Kocabalkanli\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-14:Project-14 | Motion Compensation and Evaluation for 3D Head Reconstruction]]

=====15: Building a Workflow for Cooperatively Controlled Robotic Mandibular Surgery=====
**Team Members:** Jesse Haworth\\
**Mentors:** Robin Yang, Pete Creighton, Russell Taylor, Andy Ding\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-15:Project-15 | Building a Workflow for Cooperatively Controlled Robotic Mandibular Surgery]]

=====16: VR Guided Surgery – SDF Based Guidance and Safety=====
**Team Members:** Hisashi Ishida, Juan Barragan Noguera\\
**Mentors:** Max Li, Adnan Munawar, Russell Taylor\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-16:Project-16 | VR Guided Surgery – SDF Based Guidance and Safety]]

=====17: Actuation Design for Loop Snare Operation in Eye Surgery=====
**Team Members:** Wenpeng Wang\\
**Mentors:** David Usevitch, Mehran Armand\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-17:Project-17 | Actuation Design for Loop Snare Operation in Eye Surgery]]

=====18: Automatic Mechanical Ventilation Control (AMVC)=====
**Team Members:** Haoyu Shi, Jiahe Xu\\
**Mentors:** Antwan D. Clark\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-18:Project-18 | Automatic Mechanical Ventilation Control (AMVC)]]

=====19: Glioma Classification and Biopsy Guidance with Multimodal MRI and Deep Learning=====
**Team Members:** Nhat Le\\
**Mentors:** Shanshan Jiang, Mathias Unberath\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-19:Project-19 | Glioma Classification and Biopsy Guidance with Multimodal MRI and Deep Learning]]

=====20: Mixed Reality Surgical Team Training=====
**Team Members:** Haochen Wei\\
**Mentors:** Peter Kazanzides, Dayeon Kim \\
**Project Pages:** [[:courses:456:2022:projects:456-2022-20:Project-20 | Mixed Reality Surgical Team Training]]

=====21: Magnetic PillCam for Medical Diagnosis=====
**Team Members:** Jack Yue, Bharath Heggadahalli, Mark Gonzales\\
**Mentors:** Axel Krieger, Onder Erin\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-21:Project-21 | Magnetic PillCam for Medical Diagnosis]]


=====22: Tele-operation Control of a High Dexterity Robot for Vitreoretinal Surgery=====
**Team Members:** Muhammad Hadi, Mojtaba Esfendiari\\
**Mentors:** Ali Ebrahimi, Alireza Alamdar, Adnan Munawar, Iulian Iordachita\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-22:Project-22 | Tele-operation Control of a High Dexterity Robot for Vitreoretinal Surgery]]

=====23: Photoacoustic image based intro-operative surgical guidance system in a da vinci surgical robot platform=====
**Team Members:** Zijian Wu, Shuojue Yang\\
**Mentors:** Hyunwoo Song, Hamid Moradi, Emad Boctor\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-23:Project-23 | Photoacoustic image based intro-operative surgical guidance system in a da vinci surgical robot platform]]

=====24: Evaluation of Virtual Remote Center of Motion for Minimally Invasive Surgery=====
**Team Members:** Yernar Zhetpissov\\
**Mentors:** Peter Kazanzides, Adnan Munawar\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-24:Project-24 | Evaluation of Virtual Remote Center of Motion for Minimally Invasive Surgery]]

=====25: Annotation Framework for Recurring Appointments in Medical Applications using Augmented Reality=====
**Team Members:** Guanyu Song\\
**Mentors:** Alejandro Martin Gomez\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-25:Project-25 |Annotation Framework for Recurring Appointments in Medical Applications using Augmented Reality]]

=====26: Evaluation of Various Sensing Modalities for Accurate Measurement of Neck Flexion Angle during Thyroid and Ear Surgery=====
**Team Members:** Millan Patel, Zihao Lin\\
**Mentors:** Deepa Galaiya, Eric Formeister; Zihao (Danny) Lin; Russell Taylor\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-26:Project-26 | Evaluation of Various Sensing Modalities for Accurate Measurement of Neck Flexion Angle during Thyroid and Ear Surgery]]

=====27: VR Guided Surgery - Registration Pipelines=====
**Team Members:** Ruixing Liang, Hongchao Shu\\
**Mentors:** Max Li, Mathias Unberath, Russell Taylor\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-27:Project-27 | VR Guided Surgery - Registration Pipelines]]

=====28: Automatic Segmentation of Anatomical Structures for Core Decompression Procedures =====
**Team Members:** Mingxu Liu\\
**Mentors:** Ping-cheng Ku, Alejandro Martin-Gomez\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-28:Project-28 | Automatic Segmentation of Anatomical Structures for Core Decompression Procedures ]]


=====29: Improving transparency of Galen Hand over Hand surgical robot=====
**Team Members:** Vishnu Kolal\\
**Mentors:** Adnan Munawar, Russell Taylor\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-29:Project-29 | Improving transparency of Galen Hand over Hand surgical robot]]

=====30: Force Sensing Forceps for Cochlear Implant Surgery and Hand Control Interface for Galen Tool Holder=====
**Team Members:** Ajay Gawade\\
**Mentors:** Deepa Galaiya, Anna Goodridge, Justin Kim\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-30:Project-30 | Force Sensing Forceps for Cochlear Implant Surgery and Hand Control Interface for Galen Tool Holder]]

=====31: Project Name=====
**Team Members:** Names\\
**Mentors:** Names\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-31:Project-31 | Project Name]]

=====32: Project Name=====
**Team Members:** Names\\
**Mentors:** Names\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-32:Project-32 | Project Name]]

=====33: Project Name=====
**Team Members:** Names\\
**Mentors:** Names\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-33:Project-33 | Project Name]]

=====34: Project Name=====
**Team Members:** Names\\
**Mentors:** Names\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-34:Project-34 | Project Name]]

=====35: Project Name =====
**Team Members:** Names\\
**Mentors:** Names\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-35:Project-35 | Project Name]]

=====99: Project Name=====
**Team Members:** Names\\
**Mentors:** Names\\
**Project Pages:** [[:courses:456:2022:projects:456-2022-99:Project-99 | Project 99 Name]]
courses/456/2022/projects.txt · Last modified: 2022/02/22 20:26 by ywu115