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courses:456 [2022/03/31 16:02] rtaylor2courses:456 [2024/01/24 20:14] (current) – [Basic Information] scho72
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 ======Advanced Computer-Integrated Surgery (CIS II)====== ======Advanced Computer-Integrated Surgery (CIS II)======
 ~~NOTOC~~ ~~NOTOC~~
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 CIS II (601.456/496/656/356) is a projects course for graduate students and upper-level undergrads, in which students work in teams of 1-3 on semester-long projects broadly related to computer-integrated interventions, AI in medicine, medical image analysis, or related topics. In addition to material covered in lectures/seminars by the instructor and other faculty, students are expected to read and provide critical analysis/presentations of selected papers in recitation sessions. Students taking this course are required to undertake and report on a significant term project under the supervision of the instructor and clinical end users. Grades are based both on the project and on classroom recitations. The only difference between the undergraduate versions (601.456/496) and the graduate version (601.656) of this course is the level of project undertaken. Typically, 601.656 projects require a greater degree of mathematical, image processing, or modeling background. Students wishing to attend the weekly lectures as a 1-credit seminar should sign up for 601.356.  CIS II (601.456/496/656/356) is a projects course for graduate students and upper-level undergrads, in which students work in teams of 1-3 on semester-long projects broadly related to computer-integrated interventions, AI in medicine, medical image analysis, or related topics. In addition to material covered in lectures/seminars by the instructor and other faculty, students are expected to read and provide critical analysis/presentations of selected papers in recitation sessions. Students taking this course are required to undertake and report on a significant term project under the supervision of the instructor and clinical end users. Grades are based both on the project and on classroom recitations. The only difference between the undergraduate versions (601.456/496) and the graduate version (601.656) of this course is the level of project undertaken. Typically, 601.656 projects require a greater degree of mathematical, image processing, or modeling background. Students wishing to attend the weekly lectures as a 1-credit seminar should sign up for 601.356. 
  
 +=====Basic Information=====
   * **Instructor:** **__Russell H. Taylor__** (rht@jhu.edu)   * **Instructor:** **__Russell H. Taylor__** (rht@jhu.edu)
   * **Course number:** 601.456/601.496/601.656/601.356  (formerly 600.446/646/346)   * **Course number:** 601.456/601.496/601.656/601.356  (formerly 600.446/646/346)
     * Note: 601.496 is identical to 601.456, except students **must** be members of a 3 person team.  This option is provided for CS undergrads seeking to satisfy the "team" degree requirement.     * Note: 601.496 is identical to 601.456, except students **must** be members of a 3 person team.  This option is provided for CS undergrads seeking to satisfy the "team" degree requirement.
-  * **Meeting times:** Tuesdays and Thursdays 1:30-2:45 +  * **Prerequisite:** CIS I or permission of instructor.  
-  * **Meeting room:**  +  * **Teaching Assistant: ** Sue Min (Jasmine) Cho 
-    * **Tuesdays and Thursdays:** Hackerman Hall Room B17 (basement auditorium) +    * Email: scho72@jh.edu
-  * **Prerequisite: CIS I or permission of instructor.**  +
-  * **Piazza page (for communication):** [[https://piazza.com/jhu/spring2022/cs601456496656/home| ]] +
-    * Self signup link: [[https://piazza.com/jhu/spring2022/cs601456496656]] +
-  * [[https://blackboard.jhu.edu/webapps/blackboard/content/launchLink.jsp?course_id=_251165_1&toc_id=_5071474_1&mode=cpview&mode=reset|Blackboard Link]] +
-  * Zoom link: [[https://wse.zoom.us/j/635091574?pwd=VEdTSy93VU5nazBHZWc1V0pKc2J6QT09|Zoom Link]] +
-    * For passcode, see the the course content in the [[https://blackboard.jhu.edu/webapps/blackboard/content/launchLink.jsp?course_id=_251165_1&toc_id=_5071474_1&mode=cpview&mode=reset|Blackboard Link]] +
-  * **Teaching Assistant: ** Yixuan Wu +
-    * Email: yixuan_wu@jhu.edu+
     * Office Address: Hackerman 137     * Office Address: Hackerman 137
     * TA office Hours: By appointment     * TA office Hours: By appointment
 +  * * **Meeting times and place:** Tuesdays and Thursdays 1:30-2:45 in Hackerman Hall Room B17 (basement auditorium)
 +    * **Note:** This class is intended to be in-person.  However, we will provide a [[https://wse.zoom.us/j/635091574?pwd=VEdTSy93VU5nazBHZWc1V0pKc2J6QT09|Zoom link]] for people who have a legitimate reason (e.g., illness) for missing a class or for guests.  After the first couple weeks, this link will have a passcode, which can be obtained from the TA or the Instructor.  
 +  * **Canvas link**: https://jhu.instructure.com/courses/37966
 +    * Note: We will use Canvas only in a very limited way.  This Wiki site is the main web site for CIS II. We will use [[https://piazza.com/jhu/spring2024/cs601456496656|Piazza]] for most routine communication.
 +  * **Piazza page (for communication):** [[https://piazza.com/jhu/spring2024/cs601456496656]]
 +    * Self signup link: [[https://piazza.com/jhu/spring2024/cs601456496656]]
      
-  * **{{:courses:cis_ii_kickoff_-_2022.pdf|Course kickoff slides}}**+  * **Course kickoff slides: {{ :courses:cis_ii_kickoff_-_2024.pdf |}}** 
 +    * The course syllabus is {{ :courses:cis_ii_syllabus-spring_2024.pdf |here}}.  However, the key (and controlling) information is on this website and in the kickoff slides
 + 
 + 
 +===== Projects in 2024 =====  
 +  * **[[:courses:456:2024:Projects|Follow this link for CIS II Projects for Spring 2024]]** 
 +    * **{{:courses:456:cis_ii_project_mentors_report.docx|Word file template and instructions for CIS II Project Mentors reports}}** 
 +  * **[[:courses:456:2024:Schedule|Follow this link for CIS II Spring 2024 class schedule]]** 
   * **{{:courses:cis_ii_project_template.pptx|Template for faculty and other mentors wanting to propose projects}}**   * **{{:courses:cis_ii_project_template.pptx|Template for faculty and other mentors wanting to propose projects}}**
-  * **[[https://forms.gle/2896vemNZAek7TKE6 |Nondisclosure agreement (NDA) to facilitate in-class discussions (Online form)]]** +  * **[[https://forms.gle/DyfMTFfjvAksR6FR7 |Nondisclosure agreement (NDA) to facilitate in-class discussions (2024 - Online form)]]** 
-      * {{:courses:2022_nda_for_in-class_discussions.pdf| PDF of NDA for your reference}}+      * {{:courses:456:2023:2023_nda_for_in-class_discussions_-_jan_24_2023.pdf|PDF of NDA for your reference}}
   * **{{:courses:cis_2_project_poster_template.pptx|Final Poster Template}}**   * **{{:courses:cis_2_project_poster_template.pptx|Final Poster Template}}**
   * **{{:courses:cis_2_poster_teaser_template_2019.pptx|Final Presentation Poster Teaser Template}}**   * **{{:courses:cis_2_poster_teaser_template_2019.pptx|Final Presentation Poster Teaser Template}}**
  
-  * **[[http://eng.jhu.edu/wse/page/conduct-of-research-training|Whiting School of Engineering Responsible Conduct of Research Training Policy]]** 
- 
-=====Resources===== 
-====Personal Well-Being==== 
-  * Students who are struggling with anxiety, stress, depression or other mental health related concerns, please consider connecting with resources through the JHU Counseling Center. The Counseling Center will be providing services remotely to protect the health of students, staff, and communities. Please reach out to get connected and learn about service options based on where you are living this fall at 410-516-8278 and online at http://studentaffairs.jhu.edu/counselingcenter/. 
-  * Student Outreach & Support will be fully operational (virtually) to help support students. Students can self-refer or refer a friend who may need extra support or help getting connected to resources. To connect with SOS, please email deanofstudents@jhu.edu, call 410-516-7857, or students can schedule to meet with a Case Manager by visiting the Student Outreach & Support website and follow “Schedule an Appointment”.   
- 
-====Academic Resources==== 
- * {{ :courses:personal_wellbeing_and_other_student_resource.pdf|Resources for Students from the JHU Office of Academic Support}} 
- 
-===== Projects in 2022 =====  
-  * **[[:courses:456:2022:Projects|Follow this link for CIS II Projects for Spring 2022]]** 
-  * **{{:courses:446:cis_ii_project_mentors_report.docx|Word file template and instructions for CIS II Project Mentors reports}}** 
-  
 ===== Projects in Prior Years ===== ===== Projects in Prior Years =====
   * **[[:courses:446:2011:Projects|Follow this link for CIS II Projects for Spring 2011]]**   * **[[:courses:446:2011:Projects|Follow this link for CIS II Projects for Spring 2011]]**
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   * **[[:courses:456:2020:Projects|Follow this link for CIS II Projects for Spring 2020]]**   * **[[:courses:456:2020:Projects|Follow this link for CIS II Projects for Spring 2020]]**
   * **[[:courses:456:2021:Projects|Follow this link for CIS II Projects for Spring 2021]]**   * **[[:courses:456:2021:Projects|Follow this link for CIS II Projects for Spring 2021]]**
-=====Schedule for Spring 2022=====+  * **[[:courses:456:2022:Projects|Follow this link for CIS II Projects for Spring 2022]]** 
 +  * **[[:courses:456:2023:Projects|Follow this link for CIS II Projects for Spring 2023]]** 
 +====Confidentiality and Proprietary Information====
  
-  * **January 25** +Some of the projects may involve potentially patentable or otherwise confidential material 
-    {{:courses:cis_ii_kickoff_-_2022.pdf | Introduction and organization}} +  Premature disclosure can compromise patentability 
-    * Non-disclosure agreement +  Student inventors can get patents and licensing income 
-    Presentation of project ideas +  Some projects (e.g., those using ISI API datamay require students to sign a separate non-disclosure agreement with a company. 
-      * Can Kocabalkanli (idea 18) - Motion Compensation and Evaluation for 3D Head Reconstruction +  Students need to close the loop with the Instructor on projects involving 3rd party confidential datato be sure that something is publishable.  Usually, this has not been a problem, but should be addressed early. 
-      Deepa Galaiya (idea 29 - 32) - Force Sensing Forceps for Cochlear Implant Surgery and Hand Control Interface for Galen Tool Holder; Force Sensing Drill Experimental Testing and Analysis; Evaluation of Various Sensing Modalities for Accurate Measurement of Neck Flexion Angle during Thyroid and Ear Surgery; Automatic Assessment of Surgical Ergonomics +  * Web sites for these projects will be only accessible by Instructor, the TA, the students involved, and the mentors.  Access will remain restricted for about a year, unless other arrangements are made between the Instructorthe students, and the project mentors. 
-      Adnan Munawar (idea 15) - Surgical Skill Analysis with Virtual Reality +  The whole class will sign a non-disclosure agreement to cover in-class presentations and discussion (JHTV has provided a template).  This year, we will use this [[https://docs.google.com/forms/d/e/1FAIpQLScpbw3bwxDR3wdwAaubx9qGd0uZRelaHBqukepsQAqpGDwlVg/viewform | online form]] for the agreement. 
-      * Max Li (idea 1416) - Surgical Phase Recognition using Deep Learning; Virtual Reality Guided Skull-base Surgery +Students who are uncomfortable with this should contact the Instructor immediately to see if an accommodation is possible. 
-  * **January 27** + 
-    * Presentation of project ideas + 
-      * Seth Billings (idea 21) - Multisensory Navigational Aid for Visual Prosthesis Users +=====CIS II Resources===== 
-      * Jim Fackler (idea 17) - Controlled-Monitored-Therapeutic VR environment for post-surgical pediatric critical care + 
-      * Balazs Vagvolgyi (idea 26 - 28) - Estimation of Light Exposure in Vitreoretinal Eye Surgery; Vision Guided Mosquito Dissection for the Production of Malaria Vaccine; Vision-Based Automatic Calibration of Mosquito Dissection System for the Production of Malaria Vaccine + 
-      * Emad Boctor (idea 36 - 39) - Patch ultrasound user interface; Wireless active echo; Correlation between MRIpathology, and ultrasound tomography images of prostate; Co-robotic Ultrasound Imaging of Breast Assisting Mammography +====Personal Well-Being==== 
-      David Usevitch (idea 1-4): FEA and Workspace Analysis of Loop Snare; Actuation Design for Loop Snare Operation in Eye Surgery; Miniature Camera and Light Module Design; Low-Cost Intramedullary Hole Estimation​ +  Students who are struggling with anxietystressdepression or other mental health related concernsplease consider connecting with resources through the JHU Counseling Center. The Counseling Center will be providing services remotely to protect the health of studentsstaffand communities. Please reach out to get connected and learn about service options based on where you are living this fall at 410-516-8278 and online at http://studentaffairs.jhu.edu/counselingcenter/. 
-      * Joshua Liu (idea 7-8): Laser Milling CAD/CAM for Enclosure of Neuroplastic Device in Cranial Implant; Development of a Wearable Intracranial Pressure Monitoring Device +  Because of the ongoing COVID-19 pandemic special requirements may be in effect this term, and these may vary during the term. Please keep updated with these at the following sites: 
-      * Ali Ebrahimi (idea 24): Tele-operation Control of a High Dexterity Robot for Vitreoretinal Surgery +    University information: https://covidinfo.jhu.edu/ 
-   * **February 1** +    * Whiting School of Engineering information: https://engineering.jhu.edu/covid-19/ 
-    *Presentation of project ideas +    COVID-19 vaccination is required unless an exception has been granted by the university for health or religious reasons. 
-      * Laeben Lester (idea 59, 60) +  If you are sick please notify us by email and/or Piazza so that we can make appropriate accommodations should this affect your ability to attend classcomplete assignments, or participate in assessments. The Student Health and Wellness Center is open and operational for primary care needs. If you would like to speak with a medical provider, please call 410-516-8270, and staff will determine an appropriate course of action. See also https://studentaffairs.jhu.edu/student-life/student-outreach-support/absences-from-class/illness-note-policy/ 
-      * Robin Yang (idea 40, 41) +  If you are struggling with anxiety, stress, depression, or other mental health related concerns, please consider visiting the JHU Counseling Center.  If you are concerned about a friend, please encourage that person to seek out their services. The Counseling Center is located at 3003 North Charles Street in Suite S-200 and can be reached at 410-516-8278 and online at http://studentaffairs.jhu.edu/counselingcenter/ 
-      Alejandro Martin Gomez & Adam Margalit (idea 561920) +  * Johns Hopkins University values diversity and inclusion. We are committed to providing welcoming, equitable, and accessible educational experiences for all students. Students with disabilities (including those with psychological conditions, medical conditions, and temporary disabilitiescan request accommodations for this course by providing an Accommodation Letter issued by Student Disability Services (SDS). Please request accommodations for this course as early as possible to provide time for effective communication and arrangements. For further information or to start the process of requesting accommodations, please contact Student Disability Services at Homewood Campus, Shaffer Hall #101, call410-516-4720 and emailstudentdisabilityservices@jhu.edu or visit the website https://studentaffairs.jhu.edu/disabilities/ 
-      * Peter Kazanzides (idea 222358) +   
-      Jeeun Kang (idea 57) + 
-      * Yihao Liu (idea 33) +====Academic Resources==== 
-      * Kefan Song (idea 34) +  {{ :courses:personal_wellbeing_and_other_student_resource.pdf|Resources for Students from the JHU Office of Academic Support}} 
-      * Yanzhou Wang (idea 35) +  * **[[http://eng.jhu.edu/wse/page/conduct-of-research-training|Whiting School of Engineering Responsible Conduct of Research Training Policy]]** 
-   * **February 3*+  * **Human Subjects Research:** 
-    * Presentation of project ideas +    Many projects involve some sort of user study or (less commonlyaccess to clinical data or clinical research at the School of Medicine.  For these projectsresearch protocol approved by an Institutional Review Board (IRBis required. 
-      Galen Robotics Group (idea 11 13) +    You should note that an approved protocol is a project dependency in your planning process if you plan human subjects protocol.You should consult with your project mentors on what sort of protocol is needed and start the process of obtaining approval early in the semester, since the process can take a long time.    
-      Dimitri Lezcano (idea 910) +    For most user studies conducted on the Academic Campus, the [[https://homewoodirb.jhu.edu/|Homewood IRB (HIRB)]] is appropriate.  The [[https://homewoodirb.jhu.edu/investigators/|investigators page]] on the HIRB web site has useful information.  Note that all team members on HIRB protocols must have completed human subjects research training.  You can refer to the web page [[https://homewoodirb.jhu.edu/files/2022/07/Homewood-CITI-Training-Instructions-1.pdf|Steps for Creating a CITI Account and Completing Human Subjects Research Training]] to learn how to get this training.  Note that you should contact the HIRB via email at email hirb@jhu.edu or call 410-516-6580 to be sure that you sign up for the correct training. The HIRB can also provide other useful advice. 
-      * Benjamin Killeen (idea 42) + 
-      * Daniel Rhee and Swaroop Vedula (idea 43 47) + 
-      * Ameen Amanian (idea 50) +=====Ethics===== 
-      * Axel Krieger (idea 51) +The strength of the university depends on academic and personal integrity. In this courseyou must be honest and truthful. Ethical violations include cheating on exams, plagiarism, reuse of assignments, improper use of the Internet and electronic devices, unauthorized collaboration, alteration of graded assignments, forgery and falsification, lying, facilitating academic dishonesty, and unfair competition.  
-      * Jasmine Cho (idea 52) + 
-      * Yuxiang Gao (idea 61) +You should be aware of (and followthe JHU's policies for responsible conduct of research.  Training is available at http://eng.jhu.edu/wse/page/conduct-of-research-training. 
-   * **February 8** + 
-     * Presentation of project ideas (if needed) +Report any violations you witness to the instructor. You can also contact  
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-01:project-01|Project 1: Vision Based Calibration of Mosquito Dissection System]]) +  For undergraduates: the director of student conduct (or designee) by calling the Office of Student Conduct at 410-516-2509 or via email at studentconduct@jhu.edu 
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-02:project-02|Project 2: Gaze Tracking Enabled Automatic Error Detection]]) +  For KSAS Graduate Students; rseitz5@jh.edu 
-     Plan Presentation ([[courses:456:2022:projects:456-2022-03:project-03|Project 3Automated Segmentation and Registration for Eustachian Tube Disfunction]]) +  For WSE Graduate Students christinekavanagh@jhu.edu 
-   * **February 10** + 
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-04:project-04|Project 4: In Situ Needle Path Adjustment and Trajectory Optimization]]) +=====Classroom Climate===== 
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-05:project-05|Project 5: Surgical Phase Recognition using Deep Learning]]) +I am committed to creating a classroom environment that values the diversity of experiences and perspectives that all students bring.  Everyone here has the right to be treated with dignity and respect.  I believe fostering an inclusive climate is important because research and my experience show that students who interact with peers who are different from themselves learn new things and experience tangible educational outcomes.  Please join me in creating a welcoming and vibrant classroom climate.  Note that you should expect to be challenged intellectually by me, the TAs, and your peers, and at times this may feel uncomfortable.  Indeed, it can be helpful to be pushed sometimes in order to learn and grow.  But at no time in this learning process should someone be singled out or treated unequally on the basis of any seen or unseen part of their identity. 
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-06:project-06|Project 6: Vision Guided Mosquito Dissection for the Production of Malaria Vaccine]]) + 
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-07:project-07|Project 7Co-robotic Ultrasound Imaging of Breast Assisting Mammography]]) +If you ever have concerns in this course about harassment, discrimination, or any unequal treatment, or if you seek accommodations or resources, I invite you to share directly with me or the TAs.  I promise that we will take your communication seriously and seek mutually acceptable resolutions and accommodations.  Reporting will never impact your course grade.  You may also share concerns with the department chair ([Chair’s Name and Email]), the Director of Undergraduate Studies ([DUS Name and Email]), the WSE Assistant Dean for Diversity and Inclusion (Darlene Saporu, dsaporu@jhu.edu), the KSAS Assistant Dean for Diversity and Inclusion (Araceli Frias, afrias3@jhu.edu) or the Office of Institutional Equity (oie@jhu.edu).  In handling reports, people will protect your privacy as much as possible, but faculty and staff are required to officially report information for some cases (e.g., sexual harassment). 
-   * **February 15** + 
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-08:project-08|Project 8: Surgical Skill Analysis with Virtual Reality]]) +=====Guests and Family Members===== 
-     Plan Presentation ([[courses:456:2022:projects:456-2022-09:project-09|Project 9: Virtual Reality Guided Skull-base Surgery]]) +  Occasionally students may wish to have a guest attend class. You should discuss this with me **before** the class, in order to be sure that we can accommodate request in a manner consistent with non-disclosure agreement.  Generally, this will require that anyone presenting potentially confidential material on the day in question agree to the visitor seeing the material presented and that the presence of the guest be known to the entire class.  It may also require the guest to sign the non-disclosure agreement.  Similarly, one should **not** share the video link with any third party or permit any third party to view the "live" video or video recording without my explicit permission in writing. 
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-10:project-10|Project 10: Multisensory Navigational Aid for Visual Prosthesis Users]]) +  * **Family accommodations policy:** Occasionally, you may need to bring family member to class when your responsibilities require it (for instance, if emergency child care is unavailable, or for health needs of relative).  In these cases, it usually will be better to view participate using the video link. However, if this is not possible, then discuss the situation with us beforehand and we will work with you to find a suitable accommodation.  Please be sensitive to the classroom environment, and if your family member becomes uncomfortably disruptive, you may leave the classroom and return as needed.  
-     Plan Presentation ([[courses:456:2022:projects:456-2022-11:project-11|Project 11: 3D Segmentation of Hard and Soft Tissue for Simulating X-ray Image Formation with Deep Learning]]) + 
-   * **February 17** +=====Incompletes===== 
-     Plan Presentation ([[courses:456:2022:projects:456-2022-12:project-12|Project 12: Patch ultrasound user interface]]) + 
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-13:project-13|Project 13: Development of Wearable Intracranial Pressure Monitoring Device]]) +There are important revisions to the Incomplete Grade policy in effect for the 2022-2023 academic year. The following text is an [[ https://e-catalogue.jhu.edu/engineering/full-time-residential-programs/undergraduate-policies/academic-policies/grading-policies/|excerpt from the full policy]]: 
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-14:project-14|Project 14: Motion Compensation and Evaluation for 3D Head Reconstruction]]+  A request for an Incomplete grade must be initiated by the student no later than the last day of classes via the Incomplete Grade Contract available in SIS 
-     Plan Presentation ([[courses:456:2022:projects:456-2022-15:project-15|Project 15: Building Workflow for Cooperatively Controlled Robotic Mandibular Surgery]]) +  The required elements on the Incomplete Grade Contract are listed below; all of these topics should be included in the conversation between the student and the instructor:  
-   * **February 22** +    The reason for the request for an incomplete grade   
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-16:project-16|Project 16: VR Guided Surgery – SDF Based Guidance and Safety]]) +    A description of all outstanding work that must be completed 
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-17:project-17|Project 17: Actuation Design for Loop Snare Operation in Eye Surgery]]) +    Date the work is due from the student 
-     Plan Presentation ([[courses:456:2022:projects:456-2022-18:project-18|Project 18: Automatic Mechanical Ventilation Control (AMVC)]]+    The reversion grade if the student does not complete any of the outstanding work  
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-19:project-19|Project 19: Glioma Classification and Biopsy Guidance with Multimodal MRI and Deep Learning]]+  Instructors are required to submit the new grade to the Office of the Homewood Registrar no later than 45 calendar days after the last day of classes. If the Incomplete grade is not resolved within 45 calendar days after the last day of classes, the Incomplete grade is automatically converted to the reversion grade.  
-   * **February 24** + 
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-20:project-20|Project 20: Mixed Reality Surgical Team Training]]) +
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-21:project-21|Project 21: Magnetic PillCam for Medical Diagnosis]]+
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-22:project-22|Project 22: Tele-operation Control of a High Dexterity Robot for Vitreoretinal Surgery]]) +
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-23:project-23|Project 23: Photoacoustic image based intro-operative surgical guidance system in a da vinci surgical robot platform]]) +
-   * **March 1** +
-      * **Approved Project Plans Due** +
-        * By this time**Your initial Wiki pages must also be completed** +
-      * Plan Presentation ([[courses:456:2022:projects:456-2022-24:project-24|Project 24: Evaluation of Virtual Remote Center of Motion for Minimally Invasive Surgery]]) +
-      * Plan Presentation ([[courses:456:2022:projects:456-2022-26:project-26|Project 26: Evaluation of Various Sensing Modalities for Accurate Measurement of Neck Flexion Angle during Thyroid and Ear Surgery]]) +
-      * Plan Presentation ([[courses:456:2022:projects:456-2022-27:project-27|Project 27: VR Guided Surgery - Registration Pipelines]]) +
-   * **March 3** +
-     * Plan Presentation ([[courses:456:2022:projects:456-2022-25:project-25|Project 25: Annotation Framework for Recurring Appointments in Medical Applications using Augmented Reality]]) +
-     * Plan presentation ([[courses:456:2022:projects:456-2022-28:project-28|Project 28: Automatic Segmentation of Anatomical Structures for Core Decompression Procedures ]]) +
-     * Plan presentation ([[courses:456:2022:projects:456-2022-29:project-29|Project 29: Improving transparency of Galen Hand over Hand surgical robot]]) +
-     * Plan presentation ([[courses:456:2022:projects:456-2022-30:project-30|Project 30: Force Sensing Forceps for Cochlear Implant Surgery and Hand Control Interface for Galen Tool Holder]]) +
-   * **March 8** +
-     * Background reading presentations +
-     * [[courses:456:2022:projects:456-2022-01:project-01|Project 1: Vision-Based Automatic Calibration of Mosquito Dissection System for the Production of Malaria Vaccine]] +
-     * [[courses:456:2022:projects:456-2022-02:project-02|Project 2: Gaze Tracking Enabled Automatic Robot Error Detection]] +
-     * [[courses:456:2022:projects:456-2022-03:project-03|Project 3: Automated Segmentation and Registration Platform for Eustachian Tube Dysfunction]] +
-     * [[courses:456:2022:projects:456-2022-04:project-04|Project 4: In Situ Needle Path Adjustment and Trajectory Optimization]] +
-     [[courses:456:2022:projects:456-2022-05:project-05|Project 5: Surgical Phase Recognition using Deep Learning]] +
-   * **March 10** +
-     * Background reading presentations +
-     * [[courses:456:2022:projects:456-2022-06:project-06|Project 6: Vision Guided Mosquito Dissection for the Production of Malaria Vaccine]] +
-     * [[courses:456:2022:projects:456-2022-07:project-07|Project 7: Co-Robotic Ultrasound Imaging of Breast Assisting Mammography]] +
-     * [[courses:456:2022:projects:456-2022-08:project-08|Project 8: Surgical Skill Analysis with Virtual Reality]] +
-     [[courses:456:2022:projects:456-2022-09:project-09|Project 9: Virtual Reality Guided Skull-base Surgery]] +
-     [[courses:456:2022:projects:456-2022-10:project-10|Project 10: Multisensory Navigational Aid for Visual Prosthesis Users]] +
-   * **March 15** +
-     * Checkpoint presentations +
-     * [[courses:456:2022:projects:456-2022-11:project-11|Project 11: 3D Segmentation of Hard and Soft Tissue for Simulating X-ray Image Formation with Deep Learning]] +
-     * [[courses:456:2022:projects:456-2022-12:project-12|Project 12: Patch ultrasound]] +
-     * [[courses:456:2022:projects:456-2022-13:project-13|Project 13: Development of a Wearable Intracranial Pressure Monitoring Device]] +
-   * **March 17** +
-     * Checkpoint presentations +
-     * [[courses:456:2022:projects:456-2022-14:project-14|Project 14: Motion Compensation and Evaluation for 3D Head Reconstruction]] +
-     * [[courses:456:2022:projects:456-2022-15:project-15|Project 15: Building a Workflow for Cooperatively Controlled Robotic Mandibular Surgery]] +
-     * [[courses:456:2022:projects:456-2022-16:project-16|Project 16: VR Guided Surgery SDF based guidance and safety]] +
-     * [[courses:456:2022:projects:456-2022-17:project-17|Project 17: Actuation Design for Loop Snare Operation in Eye Surgery]] +
-   * **March 22** +
-     * Spring break +
-   * **March 24** +
-     * Spring break +
-   * **March 29** +
-     * Checkpoint presentations +
-     * [[courses:456:2022:projects:456-2022-18:project-18|Project 18: Automatic Mechanical Ventilation Control (AMVC)]] +
-     * [[courses:456:2022:projects:456-2022-19:project-19|Project 19: Glioma Classification and Biopsy Guidance with Multimodal MRI and Deep Learning]] +
-     * [[courses:456:2022:projects:456-2022-20:project-20|Project 20: Mixed Reality Surgical Team Training]] +
-     * [[courses:456:2022:projects:456-2022-21:project-21|Project 21: Magnetic PillCam for Medical Diagnosis]] +
-   * **March 31** +
-     * Checkpoint presentations +
-     * [[courses:456:2022:projects:456-2022-22:project-22|Project 22: Tele-operation Control of a High Dexterity Robot for Vitreoretinal Surgery]] +
-     * [[courses:456:2022:projects:456-2022-23:project-23|Project 23: Photoacoustic image based intro-operative surgical guidance system in a da vinci surgical robot platform]] +
-     * [[courses:456:2022:projects:456-2022-24:project-24|Project 24: Evaluation of Virtual Remote Center of Motion for Minimally Invasive Surgery]] +
-     * [[courses:456:2022:projects:456-2022-25:project-25|Project 25: Annotation Framework for Recurring Appointments in Medical Applications using Augmented Reality]] +
-   * **April 5** +
-   * **All background reading reports due** +
-     * Checkpoint presentations +
-     [[courses:456:2022:projects:456-2022-26:project-26|Project 26: Evaluation of Various Sensing Modalities for Accurate Measurement of Neck Flexion Angle during Thyroid and Ear Surgery]+
-     * [[courses:456:2022:projects:456-2022-27:project-27|Project 27: VR Guided Surgery - Registration Pipelines]] +
-     * [[courses:456:2022:projects:456-2022-28:project-28|Project 28: Automatic Segmentation of Anatomical Structures for Core Decompression Procedures]] +
-     [[courses:456:2022:projects:456-2022-29:project-29|Project 29: Improving transparency of Galen Hand over Hand surgical robot]+
-   * **April 7** +
-     * Checkpoint presentations +
-     * [[courses:456:2022:projects:456-2022-30:project-30|Project 30: Force Sensing Forceps for Cochlear Implant Surgery and Hand Control Interface for Galen Tool Holder]] +
-     * [[courses:456:2022:projects:456-2022-01:project-01|Project 1: Vision-Based Automatic Calibration of Mosquito Dissection System for the Production of Malaria Vaccine]] +
-     * [[courses:456:2022:projects:456-2022-02:project-02|Project 2: Gaze Tracking Enabled Automatic Robot Error Detection]] +
-     * [[courses:456:2022:projects:456-2022-03:project-03|Project 3: Automated Segmentation and Registration Platform for Eustachian Tube Dysfunction]] +
-   * **April 12** +
-     * Checkpoint presentations +
-     * [[courses:456:2022:projects:456-2022-04:project-04|Project 4: In Situ Needle Path Adjustment and Trajectory Optimization]] +
-     * [[courses:456:2022:projects:456-2022-05:project-05|Project 5: Surgical Phase Recognition using Deep Learning]] +
-     * [[courses:456:2022:projects:456-2022-06:project-06|Project 6: Vision Guided Mosquito Dissection for the Production of Malaria Vaccine]] +
-     * [[courses:456:2022:projects:456-2022-07:project-07|Project 7: Co-Robotic Ultrasound Imaging of Breast Assisting Mammography]] +
-   * **April 14*+
-     * Checkpoint presentations +
-     * [[courses:456:2022:projects:456-2022-08:project-08|Project 8: Surgical Skill Analysis with Virtual Reality]] +
-     [[courses:456:2022:projects:456-2022-09:project-09|Project 9: Virtual Reality Guided Skull-base Surgery]] +
-     [[courses:456:2022:projects:456-2022-10:project-10|Project 10: Multisensory Navigational Aid for Visual Prosthesis Users]] +
-   **April 19** +
-     * Background reading presentations +
-     * [[courses:456:2022:projects:456-2022-11:project-11|Project 11: 3D Segmentation of Hard and Soft Tissue for Simulating X-ray Image Formation with Deep Learning]] +
-     [[courses:456:2022:projects:456-2022-12:project-12|Project 12: Patch ultrasound]] +
-     [[courses:456:2022:projects:456-2022-13:project-13|Project 13: Development of Wearable Intracranial Pressure Monitoring Device]] +
-     * [[courses:456:2022:projects:456-2022-14:project-14|Project 14: Motion Compensation and Evaluation for 3D Head Reconstruction]] +
-     * [[courses:456:2022:projects:456-2022-15:project-15|Project 15: Building Workflow for Cooperatively Controlled Robotic Mandibular Surgery]] +
-   * **April 21** +
-     * Background reading presentations +
-     * [[courses:456:2022:projects:456-2022-16:project-16|Project 16: VR Guided Surgery SDF based guidance and safety]] +
-     * [[courses:456:2022:projects:456-2022-17:project-17|Project 17: Actuation Design for Loop Snare Operation in Eye Surgery]] +
-     * [[courses:456:2022:projects:456-2022-18:project-18|Project 18: Automatic Mechanical Ventilation Control (AMVC)]] +
-     * [[courses:456:2022:projects:456-2022-19:project-19|Project 19: Glioma Classification and Biopsy Guidance with Multimodal MRI and Deep Learning]] +
-     * [[courses:456:2022:projects:456-2022-20:project-20|Project 20: Mixed Reality Surgical Team Training]] +
-   * **April 26** +
-     * Background reading presentations +
-     * [[courses:456:2022:projects:456-2022-21:project-21|Project 21: Magnetic PillCam for Medical Diagnosis]] +
-     [[courses:456:2022:projects:456-2022-22:project-22|Project 22: Tele-operation Control of a High Dexterity Robot for Vitreoretinal Surgery]] +
-     * [[courses:456:2022:projects:456-2022-23:project-23|Project 23: Photoacoustic image based intro-operative surgical guidance system in a da vinci surgical robot platform]] +
-     * [[courses:456:2022:projects:456-2022-24:project-24|Project 24: Evaluation of Virtual Remote Center of Motion for Minimally Invasive Surgery]] +
-     * [[courses:456:2022:projects:456-2022-25:project-25|Project 25: Annotation Framework for Recurring Appointments in Medical Applications using Augmented Reality]] +
-   * **April 28 (last class)** +
-     * Background reading presentations +
-     * [[courses:456:2022:projects:456-2022-26:project-26|Project 26: Evaluation of Various Sensing Modalities for Accurate Measurement of Neck Flexion Angle during Thyroid and Ear Surgery]] +
-     * [[courses:456:2022:projects:456-2022-27:project-27|Project 27: VR Guided Surgery - Registration Pipelines]] +
-     [[courses:456:2022:projects:456-2022-28:project-28|Project 28: Automatic Segmentation of Anatomical Structures for Core Decompression Procedures]] +
-     [[courses:456:2022:projects:456-2022-29:project-29|Project 29: Improving transparency of Galen Hand over Hand surgical robot]] +
-     [[courses:456:2022:projects:456-2022-30:project-30|Force Sensing Forceps for Cochlear Implant Surgery and Hand Control Interface for Galen Tool Holder]] +
-   * **May 17 th (Final Exam Date)**  +
-     * Final presentations (2:00 pm 5:00 pm EDT) +
-     * Final reports due at 6 PM EDT May 01 +
-     * Schedule and breakout room assignment (Hackerman B17)+
  
courses/456.1648742546.txt.gz · Last modified: 2022/03/31 16:02 by rtaylor2




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