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--- courses:456 [2023/01/21 21:34] – rtaylor2
+++ courses:456 [2024/01/24 20:14] (current) – [Basic Information] scho72
@@ Line 1: / Line 1: @@
 ======Advanced Computer-Integrated Surgery (CIS II)======
 ~~NOTOC~~
 CIS II (601.456/496/656/356) is a projects course for graduate students and upper-level undergrads, in which students work in teams of 1-3 on semester-long projects broadly related to computer-integrated interventions, AI in medicine, medical image analysis, or related topics. In addition to material covered in lectures/seminars by the instructor and other faculty, students are expected to read and provide critical analysis/presentations of selected papers in recitation sessions. Students taking this course are required to undertake and report on a significant term project under the supervision of the instructor and clinical end users. Grades are based both on the project and on classroom recitations. The only difference between the undergraduate versions (601.456/496) and the graduate version (601.656) of this course is the level of project undertaken. Typically, 601.656 projects require a greater degree of mathematical, image processing, or modeling background. Students wishing to attend the weekly lectures as a 1-credit seminar should sign up for 601.356.
+=====Basic Information=====
   * **Instructor:** **__Russell H. Taylor__** (rht@jhu.edu)
   * **Course number:** 601.456/601.496/601.656/601.356  (formerly 600.446/646/346)
     * Note: 601.496 is identical to 601.456, except students **must** be members of a 3 person team.  This option is provided for CS undergrads seeking to satisfy the "team" degree requirement.
   * **Prerequisite:** CIS I or permission of instructor.
-  * **Teaching Assistant: ** Juan Barragan
+  * **Teaching Assistant: ** Sue Min (Jasmine) Cho
-    * Email: jbarrag3@jh.edu
+    * Email: scho72@jh.edu
     * Office Address: Hackerman 137
     * TA office Hours: By appointment
@@ Line 16: / Line 16: @@
     * **Note:** This class is intended to be in-person.  However, we will provide a [[https://wse.zoom.us/j/635091574?pwd=VEdTSy93VU5nazBHZWc1V0pKc2J6QT09|Zoom link]] for people who have a legitimate reason (e.g., illness) for missing a class or for guests.  After the first couple weeks, this link will have a passcode, which can be obtained from the TA or the Instructor.
   * **Canvas link**: https://jhu.instructure.com/courses/37966
-    * Note: We will use Canvas only in a very limited way.  This Wiki site is the main web site for CIS II. We will use [[https://piazza.com/jhu/spring2023/cs601456496656/home|Piazza]] for most routine communication.
+    * Note: We will use Canvas only in a very limited way.  This Wiki site is the main web site for CIS II. We will use [[https://piazza.com/jhu/spring2024/cs601456496656|Piazza]] for most routine communication.
-  * **Piazza page (for communication):** [[https://piazza.com/jhu/spring2023/cs601456496656/home]]
+  * **Piazza page (for communication):** [[https://piazza.com/jhu/spring2024/cs601456496656]]
-    * Self signup link: [[https://piazza.com/jhu/spring2023/cs601456496656]]
+    * Self signup link: [[https://piazza.com/jhu/spring2024/cs601456496656]]
-  * **Course kickoff slides{{ :courses:456:2023:cis_ii_kickoff_-_2023.pdf |}}**
+  * **Course kickoff slides: {{ :courses:cis_ii_kickoff_-_2024.pdf |}}**
-    * {{ :courses:456:2023:cis_ii_syllabus-spring_2023.pdf |PDF copy of course syllabus}}.  However, the key (and controlling) information is on this website.
+    * The course syllabus is {{ :courses:cis_ii_syllabus-spring_2024.pdf |here}}.  However, the key (and controlling) information is on this website and in the kickoff slides.
-===== Projects in 2023 =====
+===== Projects in 2024 =====
-  * **[[:courses:456:2023:Projects|Follow this link for CIS II Projects for Spring 2023]]**
+  * **[[:courses:456:2024:Projects|Follow this link for CIS II Projects for Spring 2024]]**
     * **{{:courses:456:cis_ii_project_mentors_report.docx|Word file template and instructions for CIS II Project Mentors reports}}**
-  * **[[:courses:456:2023:Schedule|Follow this link for CIS II Spring 2023 class schedule]]**
+  * **[[:courses:456:2024:Schedule|Follow this link for CIS II Spring 2024 class schedule]]**
   * **{{:courses:cis_ii_project_template.pptx|Template for faculty and other mentors wanting to propose projects}}**
-  * **[[https://forms.gle/2896vemNZAek7TKE6 |Nondisclosure agreement (NDA) to facilitate in-class discussions (Online form)]]**
+  * **[[https://forms.gle/DyfMTFfjvAksR6FR7 |Nondisclosure agreement (NDA) to facilitate in-class discussions (2024 - Online form)]]**
       * {{:courses:456:2023:2023_nda_for_in-class_discussions_-_jan_24_2023.pdf|PDF of NDA for your reference}}
   * **{{:courses:cis_2_project_poster_template.pptx|Final Poster Template}}**
   * **{{:courses:cis_2_poster_teaser_template_2019.pptx|Final Presentation Poster Teaser Template}}**
 ===== Projects in Prior Years =====
   * **[[:courses:446:2011:Projects|Follow this link for CIS II Projects for Spring 2011]]**
@@ Line 48: / Line 48: @@
   * **[[:courses:456:2021:Projects|Follow this link for CIS II Projects for Spring 2021]]**
   * **[[:courses:456:2022:Projects|Follow this link for CIS II Projects for Spring 2022]]**
+  * **[[:courses:456:2023:Projects|Follow this link for CIS II Projects for Spring 2023]]**
 ====Confidentiality and Proprietary Information====
@@ Line 78: / Line 78: @@
   * {{ :courses:personal_wellbeing_and_other_student_resource.pdf|Resources for Students from the JHU Office of Academic Support}}
   * **[[http://eng.jhu.edu/wse/page/conduct-of-research-training|Whiting School of Engineering Responsible Conduct of Research Training Policy]]**
+  * **Human Subjects Research:**
+    * Many projects involve some sort of user study or (less commonly) access to clinical data or clinical research at the School of Medicine.  For these projects, a research protocol approved by an Institutional Review Board (IRB) is required.
+    * You should note that an approved protocol is a project dependency in your planning process if you plan a human subjects protocol.You should consult with your project mentors on what sort of protocol is needed and start the process of obtaining approval early in the semester, since the process can take a long time.
+    * For most user studies conducted on the Academic Campus, the [[https://homewoodirb.jhu.edu/|Homewood IRB (HIRB)]] is appropriate.  The [[https://homewoodirb.jhu.edu/investigators/|investigators page]] on the HIRB web site has useful information.  Note that all team members on HIRB protocols must have completed human subjects research training.  You can refer to the web page [[https://homewoodirb.jhu.edu/files/2022/07/Homewood-CITI-Training-Instructions-1.pdf|Steps for Creating a CITI Account and Completing Human Subjects Research Training]] to learn how to get this training.  Note that you should contact the HIRB via email at email hirb@jhu.edu or call 410-516-6580 to be sure that you sign up for the correct training. The HIRB can also provide other useful advice.
 =====Ethics=====

courses/456.1674336881.txt.gz · Last modified: 2023/01/21 21:34 by rtaylor2