CIS Spring 2018 Projects

Here is a list of the projects and each individual set of slides. These will be presented in class over the first few sessions of class.

Remember several points, however:

• This list is not necessarily complete. More will be added.
• You are ultimately responsible for finding and proposing a project.
• You must get agreement from your mentors that your proposed project is one for which you are appropriate.
• Your project does not have to be one of the ones in this suggested list. However, if it is not one of these, you should also get my agreement that it is appropriate for the course.

The links below point to the Wiki pages for your projects. You should follow the link. This will bring you to a project home page that you can edit once you log in. The two little gear symbols on the upper right give access to functions like login, logout, edit page, etc. The login/logout is on the leftmost gear. Note that there are many styles of Wiki, with different syntax. This one is “dokuwiki”. There is a link to help pages from the edit page.

The current default access settings are “read” for the CiiS lab, no access to members of the general public, and full power to members of your group. If you want to restrict read access to smaller group (e.g., all 456 students, etc.) contact Prof. Taylor. Prof. Taylor can also implement access control for individual pages if you so desire. If you want the whole world to be able to read your project pages, that can be arranged. Do not post anything to unprotected pages that you want kept private until you have arranged with Prof. Taylor to protect them.

Also, verify that each member of your group can log in. If you have trouble, contact Prof. Taylor via email providing correct name and JHED id.

Finally, if you want to give other individuals (e.g., your mentors) access to your project pages, provide name and JHED id to Prof. Taylor

NOTE: At the end of the semester, all projects will be made readable to the general public, unless you make arrangements otherwise with Prof. Taylor

Final Day Photos
Certificates and Awards
Here is the Link: Certificates and Awards

As we discussed in class, some of the projects may contain potentially patentable material or other material that should not be disclosed publicly until a later time. In order to permit free in-class discussion of this material, we have developed a non-disclosure agreement. When asked, the entire class agreed to sign such an agreement, a copy of which is linked below.

• Here is a link to current year's agreement.
• If any member of the class has any reservations about this, please inform us immediately.
• Also, class members are reminded to identify potentially confidential material on any slides or other presentation material used in class

Team Members: Rui Yin
Mentors: Russell Taylor, Masaru Ishii
Project Pages: Smart Endoscope

Team Members: Felix Yu, GianLuca Croso
Mentors: Tae-Soo Kim, Austin Reiter
Project Pages: Query by Video

Team Members: Blackberrie Eddins
Mentor: Muyinatu Bell
Project Pages: Photoacoustic System for Spinal Surgery

Team Members: Daniel Yuan, Vincent Qi
Mentors: Todd McNutt, Pranav Lakshminarayanan
Project Pages: Anomaly detection for treatment planning and a learning health system in radiotherapy

Team Members: Willie Franceschi, Alaleh Azhir, Santiago Appiani
Mentors: Todd McNutt, Pranav Lakshminarayanan
Project Pages: User interface to extract radio-morphologic features for refined dose-toxicity analysis in radiotherapy

Team Members: Scott Pourshalchi, Giacomo Taylor
Mentors: Jeremy Brown, Anand Malpani
Project Pages: Objective Assessment of Robotic Surgery Skill

Team Members: Ali Ebrahimi
Mentors: Marin Kobilarov, Iulian Iordachita, Russell Taylor, Nirav Patel
Project Pages: Robot Control Algorithms Based on Sclera Force Information

Team Members: Michael Mudgett, Mariya Kazachkova
Mentors: Mathias Unberath
Project Pages: Low Dose Fluoroscopy for Orthopedic Surgery

Team Members: Benjamin Pikus, Patrick Myers, Alexander Chang
Mentors: Ehsan Azimi, Chien-Ming Huang, Peter Kazanzides, Camilo Molina
Project Pages: Content Generation for HMD Based Medical Training

Team Members: Prateek Bhatnagar, Allan Wang
Mentors: Ehsan Azimi, Chien-Ming Huang, Peter Kazanzides, Nassir Navab, Russ Taylor
Project Pages: HMD-Based Eye-Gaze Analysis in Performing Medical Procedure

Team Members: Wenhao GU, Nianhang DU, Billy Carrington
Mentors: Mathias Unberath, Robert Grupp, Mehran Armand, John Tis
Project Pages: Tool Tacking for Periacetabular Osteotomy using CamC

Team Members: Sara Cronin, Evelyn Yeh
Mentors: Sauleh Siddiqu
Project Pages: Patient Flow and Staff Scheduling in Perioperative Care

Team Members: Rohit Joshi, Manyu Sharma
Mentors: Anand Malpani, Ayushi Sinha, Molly O’Brien
Project Pages: Septum Reconstruction from Tool Motion Data

Team Members: Liujiang Yan
Mentors: Rob Grupp
Project Pages: Deep Learning for fluoroscopic Feature Detection

Team Members: Prasad Vagdargi, Brandon Tran, Nick Skacel
Mentors: Russell Taylor, Paul Wilkening, Yunus Sevimli, David Levi, Francis Creigton, Chris Razavi
Project Pages: Force Sensing Drill/Cutter Tool for Skull Base Surgery

Team Members: Amrita Krishnaraj
Mentors: Nitish Thakor, Jeremy Brown
Project Pages: Design and Fabrication of tactile interface for palpation

Team Members: Sunny Thodupunuri, Archan Patel
Mentors: Todd McNutt, Pranav Lakshminarayanan
Project Pages: Machine learning to determine regions of influence of treatment related toxicity in lung cancer

Team Members: Tracy Kao
Mentors: Emad Boctor, Akila Viswanathan, Carmen Kut
Project Pages: Ultrasound Needle Guidance for Hydrogel Injection During Cervical Cancer Brachytherapy

Team Members: Ganesh Arvapalli
Mentors: Amir Kherdamand, David S. Zee, Farshid Alambeigi, Mehran Armand
Project Pages: Robot-Assisted Transcranial Magnetic Stimulation (RA-TMS)

Team Members: Eduardo Gonzalez
Mentors: Muyinatu Bell
Project Pages: Enhancement of needle tracking accuracy using US/CT registration applied to spinal surgery

Team Members: Ben Ramsay, Nicolas Eng
Mentors: Jeff Siewerdsen, Tharindu De Silva
Project Pages: Auto-Segmentation of Spine CT for Data Analysis of Surgical Outcome

Team Members: Zach Heiman
Mentors: Xingtong Liu
Project Pages: Structure from Motion from Long Video Sequence

Team Members: Member1, Member2
Mentors: Mentor1, Mentor2
Project Pages: Project-23